Curasynth / Models
What the platform computes, and how it says so.
Retrieval finds what has been measured. A decision usually needs more than that. These are the models that run beside the data — some over the whole catalog on every release, some on demand from a monograph — and the one rule they all obey.
On demand
Boltz-2: co-fold a drug with a target, and read the pose back.
Boltz-2 is an open, MIT-licensed structure model that folds a protein and a ligand together and predicts their binding affinity. Curasynth runs it as a service beside the data. From a drug or target monograph, Predict binding names the partner, returns a cost estimate, and runs on confirmation under a dollar ceiling you set; the result lands as a new row against the pair.
What comes back is more than a number. The predicted potency and binder probability sit beside the measured value where one exists; the pose is read for the model's own doubt — interface predicted aligned error, per-residue confidence — and for what a chemist would check: contacts, buried area, clashes, and whether the ligand sits in the known pocket. The complex renders in the structure viewer, colored by confidence and labeled predicted.
The same service screens a drug's structural neighbors at its primary target: each Morgan-fingerprint analog scored for predicted potency with its similarity to the reference and the reference's own measured potency beside it.
16 pairs co-folded to date · 6 analog screens · measured Ki shown beside every prediction
Over the whole catalog
Models that run on every release.
These are precomputed for every entity that has the inputs, land as bridge tables, and are rebuilt as a new vintage when the method or the data changes — never in place.
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Ranking
A composite that asks about this disease
Ranking targets by how strongly they are implicated in a disease answers only half the question, and outside cancer it answers almost none of it. The composite folds in eight parts: the association evidence under your own weights, tractability, chemical matter (measured occupancy where it exists, a predicted binder probability discounted where it does not), dependency read in the disease's own cell lines, tumour expression, clinical precedent — the phase a drug on this target reached for this disease — a mechanistic route from target to disease, and collateral lethality. The three parts that only mean something in cancer weigh zero elsewhere and render as a dash rather than a zero, and the rest scale up. Every part, its weight and its reason ride on the row.
Type 2 diabetes returns PPARG, GLP1R, ACE, DPP4, SLC5A2 — how the disease is actually treated -
Pharmacology
Receptor occupancy and target engagement
For every drug with binding data, its targets are solved together for occupancy at a free-ligand exposure — the coupled answer beside the independent L/(L+Kd) for each — across a ladder from 1 nM to 1 µM. The binding constant is the geometric median over uncensored Ki/Kd measurements, with functional IC50/EC50 used only where no binding constant exists and marked as such; the measured range becomes the occupancy interval. A profile can be compared to a reference drug's by RMS distance, and scored for liability burden over the standard in-vitro safety-pharmacology panel with the primary target excluded.
261,772 occupancy rows · 30,835 liability screens · 43-target panel (Bowes et al., 2012) -
Safety
Pharmacovigilance with shrinkage
Twelve quarters of FDA adverse-event reports, deduplicated to 4.2 million cases, are counted into one 2×2 table per drug and MedDRA term, with strata, onset days and the serious share. Each cell is scored for disproportionality: proportional reporting ratio, reporting odds ratio, and the empirical-Bayes geometric mean with its interval, plus a sex-by-age adjusted odds ratio and the onset pattern. A signal is at least three co-reports with an EBGM lower bound of two or a PRR lower limit above one — a hypothesis for review, never an incidence, because spontaneous reports have no denominator.
1,913,561 2×2 tables · 864,709 scored signals · 2023 Q3 – 2026 Q2 -
Clinical
Arm-level and pooled trial effects
Where a registered study has posted results, its arms are compared from the reported event and participant counts to give an effect with its interval; trials of the same comparison in the same disease are pooled. The trials landscape counts how many studies carry a computed arm effect so absence reads as absence.
230,987 arm effects · 19,236 pooled comparisons -
Genetics
Dependency, copy number and collateral lethality
CRISPR dependency from DepMap is rolled up per target with the pattern a decision needs — selectively essential or broadly dispensable — and measured in three-dimensional organoid screens beside the two-dimensional ones. Co-dependency ranks each gene's top partners; co-deletion and deletion frequency come from TCGA PanCancer copy number; together they yield collateral-lethality candidates — a passenger deleted alongside a tumor suppressor whose paralog the tumor now depends on — with the mechanism recorded. Published synthetic-lethal pairs are served beside them.
874,159 co-deletions · 447,650 co-dependencies · 39,275 collateral-lethality candidates · 250,480 synthetic-lethal rows -
Binding
Consensus potency over censored measurements
Measurements from ChEMBL, BindingDB and the PDSP Ki database are collapsed by one rule — duplicates across sources removed first, so every median is over distinct measurements — into a consensus per drug–target pair: the median in p-affinity space, the best value in nanomolar terms, the count, the sources, whether any value was censored, and which source won precedence. A parent-level rollup joins the salts.
461,919 measurements → 145,727 pairs · 149,778 by parent -
Chemistry
Standardization, similarity and properties
Every ingredient is standardized before it is given an identity — an all-salt input is refused rather than registered under its counter-ion — which is what makes a drug's identifier an assertion about a molecule. Morgan fingerprints give each single-ingredient drug its twenty nearest neighbors with the targets they share measured; descriptors, a CNS multi-parameter score and a blood–brain-barrier screen are computed for every drug.
11,758 drugs with properties · 71,610 neighbor rows -
Structure
Served structures and their annotation
For each target a render decision is made once: an experimental co-crystal from the PDB where one exists with a ligand of interest, otherwise the predicted structure. Domains, enzyme class and structural family are annotated per entry; each solved structure links to its primary citation. Drugs render from a stored 3-D conformer.
79,269 target structures · 127,476 domain rows · 116,960 structure–paper links -
Literature
Citation intent and stance
Every reference in every held paper is resolved to a work; each citing sentence is classified for intent and stance, so the lineage of a finding can be read as confirmation, use, or dispute rather than a count. Author and organization identity is resolved through ORCID, OpenAlex and ROR, with the resolution method stated on the page.
301,416,662 references resolved · 208,113,080 intent markers · 9,256,585 authors with metrics
Next, with technical partners
The methods we would rather call than build.
The registry that resolves a method to a backend was built so that a partner's model can be called from the same cited workflow with the same provenance rules. The next slots are pocket-aware docking where a co-crystal exists and blind docking where it does not; ADMET endpoints fine-tuned on labeled data; and a calibrated target-validity model to replace hand-set constants. If you build one of these, we should talk.
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